J3_5NGM_019

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_019 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1822

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5NGM|1|Aa|U|952
5NGM|1|Aa|G|953
5NGM|1|Aa|G|954
5NGM|1|Aa|A|955
*
5NGM|1|Aa|U|1245
5NGM|1|Aa|A|1246
5NGM|1|Aa|C|1247
*
5NGM|1|Aa|G|1347
5NGM|1|Aa|G|1348
5NGM|1|Aa|A|1349
5NGM|1|Aa|A|1350

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ai

30S ribosomal protein S9

Chain Am

30S ribosomal protein S13

Chain Av

Ribosome hibernation promoting factor