J3_5NGM_024
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 5NGM|1|Aa|U|1250, 5NGM|1|Aa|A|1309, 5NGM|1|Aa|U|1311, 5NGM|1|Aa|U|1312
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NGM_024 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.4547
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NGM|1|Aa|C|1247
5NGM|1|Aa|A|1248
5NGM|1|Aa|A|1249
5NGM|1|Aa|U|1250
5NGM|1|Aa|G|1251
*
5NGM|1|Aa|C|1306
5NGM|1|Aa|U|1307
5NGM|1|Aa|C|1308
5NGM|1|Aa|A|1309
5NGM|1|Aa|G|1310
5NGM|1|Aa|U|1311
5NGM|1|Aa|U|1312
5NGM|1|Aa|C|1313
*
5NGM|1|Aa|G|1344
5NGM|1|Aa|C|1345
5NGM|1|Aa|U|1346
5NGM|1|Aa|G|1347
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ag
- 30S ribosomal protein S7
- Chain Am
- 30S ribosomal protein S13
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