J3_5NGM_025

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GUGAAAAGCAC*GAGUGAAAUAGAACC

Length

28 nucleotides

Bulged bases

5NGM|1|AA|U|549, 5NGM|1|AA|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_025 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.1184

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5NGM|1|AA|G|30
5NGM|1|AA|C|31
*
5NGM|1|AA|G|520
5NGM|1|AA|U|521
5NGM|1|AA|G|522
5NGM|1|AA|A|523
5NGM|1|AA|A|524
5NGM|1|AA|A|525
5NGM|1|AA|A|526
5NGM|1|AA|G|527
5NGM|1|AA|C|528
5NGM|1|AA|A|529
5NGM|1|AA|C|530
*
5NGM|1|AA|G|541
5NGM|1|AA|A|542
5NGM|1|AA|G|543
5NGM|1|AA|U|544
5NGM|1|AA|G|545
5NGM|1|AA|A|546
5NGM|1|AA|A|547
5NGM|1|AA|A|548
5NGM|1|AA|U|549
5NGM|1|AA|A|550
5NGM|1|AA|G|551
5NGM|1|AA|A|552
5NGM|1|AA|A|553
5NGM|1|AA|C|554
5NGM|1|AA|C|555

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L20

Chain AQ

50S ribosomal protein L22

Chain AS

50S ribosomal protein L24