3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CUUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
5NGM|1|AA|U|494, 5NGM|1|AA|C|502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5NGM_026 not in the Motif Atlas
Homologous match to J3_4WF9_012
Geometric discrepancy: 0.0983
The information below is about J3_4WF9_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

5NGM|1|AA|C|32
5NGM|1|AA|U|33
5NGM|1|AA|U|34
5NGM|1|AA|G|35
*
5NGM|1|AA|C|491
5NGM|1|AA|G|492
5NGM|1|AA|A|493
5NGM|1|AA|U|494
5NGM|1|AA|A|495
5NGM|1|AA|G|496
5NGM|1|AA|U|497
5NGM|1|AA|G|498
5NGM|1|AA|A|499
5NGM|1|AA|A|500
5NGM|1|AA|C|501
5NGM|1|AA|C|502
5NGM|1|AA|A|503
5NGM|1|AA|G|504
5NGM|1|AA|U|505
5NGM|1|AA|A|506
5NGM|1|AA|C|507
*
5NGM|1|AA|G|514
5NGM|1|AA|G|515
5NGM|1|AA|A|516
5NGM|1|AA|A|517
5NGM|1|AA|A|518
5NGM|1|AA|G|519

Current chains

Chain AA
23S Ribosomal RNA

Nearby chains

Chain A2
50S ribosomal protein L34
Chain AE
50S ribosomal protein L4
Chain AO
50S ribosomal protein L20
Chain AR
50S ribosomal protein L23

Coloring options:


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