J3_5NGM_026
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5NGM|1|AA|U|494, 5NGM|1|AA|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NGM_026 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.0983
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5NGM|1|AA|C|32
5NGM|1|AA|U|33
5NGM|1|AA|U|34
5NGM|1|AA|G|35
*
5NGM|1|AA|C|491
5NGM|1|AA|G|492
5NGM|1|AA|A|493
5NGM|1|AA|U|494
5NGM|1|AA|A|495
5NGM|1|AA|G|496
5NGM|1|AA|U|497
5NGM|1|AA|G|498
5NGM|1|AA|A|499
5NGM|1|AA|A|500
5NGM|1|AA|C|501
5NGM|1|AA|C|502
5NGM|1|AA|A|503
5NGM|1|AA|G|504
5NGM|1|AA|U|505
5NGM|1|AA|A|506
5NGM|1|AA|C|507
*
5NGM|1|AA|G|514
5NGM|1|AA|G|515
5NGM|1|AA|A|516
5NGM|1|AA|A|517
5NGM|1|AA|A|518
5NGM|1|AA|G|519
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A2
- 50S ribosomal protein L34
- Chain AE
- 50S ribosomal protein L4
- Chain AO
- 50S ribosomal protein L20
- Chain AR
- 50S ribosomal protein L23
Coloring options: