J3_5NGM_028

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_028 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0728

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5NGM|1|AA|G|1468
5NGM|1|AA|G|1469
5NGM|1|AA|G|1470
5NGM|1|AA|A|1471
5NGM|1|AA|C|1472
5NGM|1|AA|G|1473
*
5NGM|1|AA|C|1611
5NGM|1|AA|C|1612
*
5NGM|1|AA|G|1615
5NGM|1|AA|A|1616
5NGM|1|AA|A|1617
5NGM|1|AA|A|1618
5NGM|1|AA|A|1619
5NGM|1|AA|G|1620
5NGM|1|AA|C|1621

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2