J3_5NGM_033
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUAUG
- Length
- 18 nucleotides
- Bulged bases
- 5NGM|1|Aa|U|1224
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NGM_033 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.2155
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NGM|1|Aa|C|999
5NGM|1|Aa|U|1000
5NGM|1|Aa|U|1001
5NGM|1|Aa|G|1002
5NGM|1|Aa|A|1003
5NGM|1|Aa|C|1004
5NGM|1|Aa|A|1005
5NGM|1|Aa|U|1006
*
5NGM|1|Aa|A|1055
5NGM|1|Aa|C|1056
5NGM|1|Aa|A|1057
5NGM|1|Aa|G|1058
*
5NGM|1|Aa|C|1220
5NGM|1|Aa|U|1221
5NGM|1|Aa|U|1222
5NGM|1|Aa|A|1223
5NGM|1|Aa|U|1224
5NGM|1|Aa|G|1225
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain An
- 30S ribosomal protein S14 type Z
Coloring options: