J3_5NJT_005
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_005 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1506
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NJT|1|A|U|953
5NJT|1|A|G|954
5NJT|1|A|G|955
5NJT|1|A|A|956
*
5NJT|1|A|U|1244
5NJT|1|A|A|1245
5NJT|1|A|C|1246
*
5NJT|1|A|G|1346
5NJT|1|A|G|1347
5NJT|1|A|A|1348
5NJT|1|A|A|1349
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S13
- Chain x
- Ribosome hibernation promotion factor
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