J3_5NJT_011
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 5NJT|1|A|U|1249, 5NJT|1|A|U|1311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_011 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.1917
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|A|C|1246
5NJT|1|A|A|1247
5NJT|1|A|A|1248
5NJT|1|A|U|1249
5NJT|1|A|G|1250
*
5NJT|1|A|C|1305
5NJT|1|A|U|1306
5NJT|1|A|C|1307
5NJT|1|A|A|1308
5NJT|1|A|G|1309
5NJT|1|A|U|1310
5NJT|1|A|U|1311
5NJT|1|A|C|1312
*
5NJT|1|A|G|1343
5NJT|1|A|C|1344
5NJT|1|A|U|1345
5NJT|1|A|G|1346
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S13
Coloring options: