J3_5NJT_025
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CC*GUUGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 5NJT|1|U|U|2858
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_025 not in the Motif Atlas
- Homologous match to J3_4WF9_021
- Geometric discrepancy: 0.2812
- The information below is about J3_4WF9_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|U|C|2839
5NJT|1|U|C|2840
*
5NJT|1|U|G|2856
5NJT|1|U|U|2857
5NJT|1|U|U|2858
5NJT|1|U|G|2859
5NJT|1|U|A|2860
5NJT|1|U|U|2861
*
5NJT|1|U|A|2907
5NJT|1|U|A|2908
5NJT|1|U|U|2909
5NJT|1|U|C|2910
5NJT|1|U|G|2911
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain g
- 50S ribosomal protein L17
- Chain p
- 50S ribosomal protein L32
Coloring options: