J3_5NJT_033
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAGAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 5NJT|1|U|G|550, 5NJT|1|U|U|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_033 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2347
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5NJT|1|U|G|30
5NJT|1|U|C|31
*
5NJT|1|U|G|521
5NJT|1|U|U|522
5NJT|1|U|G|523
5NJT|1|U|A|524
5NJT|1|U|A|525
5NJT|1|U|A|526
5NJT|1|U|A|527
5NJT|1|U|G|528
5NJT|1|U|C|529
5NJT|1|U|A|530
5NJT|1|U|C|531
*
5NJT|1|U|G|542
5NJT|1|U|A|543
5NJT|1|U|G|544
5NJT|1|U|U|545
5NJT|1|U|G|546
5NJT|1|U|A|547
5NJT|1|U|A|548
5NJT|1|U|A|549
5NJT|1|U|G|550
5NJT|1|U|A|551
5NJT|1|U|G|552
5NJT|1|U|A|553
5NJT|1|U|U|554
5NJT|1|U|C|555
5NJT|1|U|C|556
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain j
- 50S ribosomal protein L20
- Chain l
- 50S ribosomal protein L22
- Chain m
- 50S ribosomal protein L23
- Chain n
- 50S ribosomal protein L24
Coloring options: