J3_5NJT_034
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5NJT|1|U|U|495, 5NJT|1|U|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_034 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1153
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5NJT|1|U|C|32
5NJT|1|U|U|33
5NJT|1|U|U|34
5NJT|1|U|G|35
*
5NJT|1|U|C|492
5NJT|1|U|G|493
5NJT|1|U|A|494
5NJT|1|U|U|495
5NJT|1|U|A|496
5NJT|1|U|G|497
5NJT|1|U|U|498
5NJT|1|U|G|499
5NJT|1|U|A|500
5NJT|1|U|A|501
5NJT|1|U|C|502
5NJT|1|U|C|503
5NJT|1|U|A|504
5NJT|1|U|G|505
5NJT|1|U|U|506
5NJT|1|U|A|507
5NJT|1|U|C|508
*
5NJT|1|U|G|515
5NJT|1|U|G|516
5NJT|1|U|A|517
5NJT|1|U|A|518
5NJT|1|U|A|519
5NJT|1|U|G|520
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain j
- 50S ribosomal protein L20
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
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