J3_5NO4_004

3D structure

PDB id

5NO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases (A, C, G, U)

871U, 873A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NO4_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1485

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.2

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5NO4|1|A|C|826
5NO4|1|A|U|827
5NO4|1|A|U|828
5NO4|1|A|G|829
*
5NO4|1|A|C|857
5NO4|1|A|G|858
5NO4|1|A|G|859
5NO4|1|A|A|860
5NO4|1|A|G|861
*
5NO4|1|A|C|868
5NO4|1|A|G|869
5NO4|1|A|U|870
5NO4|1|A|U|871
5NO4|1|A|A|872
5NO4|1|A|A|873
5NO4|1|A|G|874

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S8