J3_5NO4_012
3D structure
- PDB id
- 5NO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 5NO4|1|A|U|1240, 5NO4|1|A|C|1302
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NO4_012 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.1264
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NO4|1|A|C|1237
5NO4|1|A|A|1238
5NO4|1|A|A|1239
5NO4|1|A|U|1240
5NO4|1|A|G|1241
*
5NO4|1|A|C|1296
5NO4|1|A|G|1297
5NO4|1|A|U|1298
5NO4|1|A|A|1299
5NO4|1|A|G|1300
5NO4|1|A|U|1301
5NO4|1|A|C|1302
5NO4|1|A|C|1303
*
5NO4|1|A|G|1334
5NO4|1|A|U|1335
5NO4|1|A|C|1336
5NO4|1|A|G|1337
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S13
- Chain Z
- Small ribosomal subunit biogenesis GTPase RsgA
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