J3_5NP6_004

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5NP6|1|D|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NP6_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1226

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5NP6|1|D|C|826
5NP6|1|D|U|827
5NP6|1|D|U|828
5NP6|1|D|G|829
*
5NP6|1|D|C|857
5NP6|1|D|G|858
5NP6|1|D|G|859
5NP6|1|D|A|860
5NP6|1|D|G|861
*
5NP6|1|D|C|868
5NP6|1|D|G|869
5NP6|1|D|U|870
5NP6|1|D|U|871
5NP6|1|D|A|872
5NP6|1|D|A|873
5NP6|1|D|G|874

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S2

Chain K

30S ribosomal protein S8

Chain X

30S ribosomal protein S21