3D structure

PDB id
5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S structure prior to bypassing
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
5NP6|1|Y|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5NP6_017 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.2322
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

5NP6|1|Y|C|1298
5NP6|1|Y|G|1299
5NP6|1|Y|G|1300
5NP6|1|Y|A|1301
5NP6|1|Y|A|1302
5NP6|1|Y|G|1303
*
5NP6|1|Y|C|1625
5NP6|1|Y|A|1626
5NP6|1|Y|G|1627
*
5NP6|1|Y|C|1639
5NP6|1|Y|A|1640
5NP6|1|Y|A|1641
5NP6|1|Y|G|1642

Current chains

Chain Y
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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