J3_5NP6_018

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5NP6|1|Y|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NP6_018 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1712

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5NP6|1|Y|C|1306
5NP6|1|Y|A|1307
5NP6|1|Y|A|1308
5NP6|1|Y|G|1309
*
5NP6|1|Y|C|1605
5NP6|1|Y|C|1606
5NP6|1|Y|C|1607
5NP6|1|Y|A|1608
5NP6|1|Y|A|1609
5NP6|1|Y|A|1610
5NP6|1|Y|C|1611
*
5NP6|1|Y|G|1620
5NP6|1|Y|U|1621
5NP6|1|Y|G|1622

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34