J3_5NP6_034

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NP6_034 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1357

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5NP6|1|Y|G|1424
5NP6|1|Y|G|1425
5NP6|1|Y|G|1426
5NP6|1|Y|A|1427
5NP6|1|Y|C|1428
5NP6|1|Y|G|1429
*
5NP6|1|Y|C|1564
5NP6|1|Y|C|1565
*
5NP6|1|Y|G|1568
5NP6|1|Y|A|1569
5NP6|1|Y|A|1570
5NP6|1|Y|A|1571
5NP6|1|Y|A|1572
5NP6|1|Y|G|1573
5NP6|1|Y|C|1574

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2