J3_5NRG_015

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GC*GUGAAAAGCAC*GAGUGAAAUAGAACC

Length

28 nucleotides

Bulged bases

5NRG|1|X|U|549, 5NRG|1|X|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_015 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.0629

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5NRG|1|X|G|30
5NRG|1|X|C|31
*
5NRG|1|X|G|520
5NRG|1|X|U|521
5NRG|1|X|G|522
5NRG|1|X|A|523
5NRG|1|X|A|524
5NRG|1|X|A|525
5NRG|1|X|A|526
5NRG|1|X|G|527
5NRG|1|X|C|528
5NRG|1|X|A|529
5NRG|1|X|C|530
*
5NRG|1|X|G|541
5NRG|1|X|A|542
5NRG|1|X|G|543
5NRG|1|X|U|544
5NRG|1|X|G|545
5NRG|1|X|A|546
5NRG|1|X|A|547
5NRG|1|X|A|548
5NRG|1|X|U|549
5NRG|1|X|A|550
5NRG|1|X|G|551
5NRG|1|X|A|552
5NRG|1|X|A|553
5NRG|1|X|C|554
5NRG|1|X|C|555

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24