J3_5NRG_016

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5NRG|1|X|U|494, 5NRG|1|X|C|502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_016 not in the Motif Atlas

Homologous match to J3_4WF9_012

Geometric discrepancy: 0.0792

The information below is about J3_4WF9_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|C|32
5NRG|1|X|U|33
5NRG|1|X|U|34
5NRG|1|X|G|35
*
5NRG|1|X|C|491
5NRG|1|X|G|492
5NRG|1|X|A|493
5NRG|1|X|U|494
5NRG|1|X|A|495
5NRG|1|X|G|496
5NRG|1|X|U|497
5NRG|1|X|G|498
5NRG|1|X|A|499
5NRG|1|X|A|500
5NRG|1|X|C|501
5NRG|1|X|C|502
5NRG|1|X|A|503
5NRG|1|X|G|504
5NRG|1|X|U|505
5NRG|1|X|A|506
5NRG|1|X|C|507
*
5NRG|1|X|G|514
5NRG|1|X|G|515
5NRG|1|X|A|516
5NRG|1|X|A|517
5NRG|1|X|A|518
5NRG|1|X|G|519

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L4

Chain N

50S ribosomal protein L20

Chain Q

50S ribosomal protein L23