J3_5NRG_017

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UAAG*CGCAAAC*GUA

Length

14 nucleotides

Bulged bases

5NRG|1|X|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NRG_017 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1612

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5NRG|1|X|U|1343
5NRG|1|X|A|1344
5NRG|1|X|A|1345
5NRG|1|X|G|1346
*
5NRG|1|X|C|1649
5NRG|1|X|G|1650
5NRG|1|X|C|1651
5NRG|1|X|A|1652
5NRG|1|X|A|1653
5NRG|1|X|A|1654
5NRG|1|X|C|1655
*
5NRG|1|X|G|1664
5NRG|1|X|U|1665
5NRG|1|X|A|1666

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34