J3_5O60_007

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O60_007 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1032

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5O60|1|A|C|1413
5O60|1|A|G|1414
5O60|1|A|A|1415
5O60|1|A|A|1416
5O60|1|A|A|1417
5O60|1|A|G|1418
*
5O60|1|A|C|1843
5O60|1|A|A|1844
5O60|1|A|G|1845
*
5O60|1|A|U|1857
5O60|1|A|A|1858
5O60|1|A|A|1859
5O60|1|A|G|1860

Current chains

Chain A

23S rRNA

Nearby chains