J3_5O60_008

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5O60|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O60_008 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1021

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5O60|1|A|C|1421
5O60|1|A|A|1422
5O60|1|A|A|1423
5O60|1|A|G|1424
*
5O60|1|A|C|1823
5O60|1|A|C|1824
5O60|1|A|C|1825
5O60|1|A|A|1826
5O60|1|A|A|1827
5O60|1|A|A|1828
5O60|1|A|C|1829
*
5O60|1|A|G|1838
5O60|1|A|U|1839
5O60|1|A|G|1840

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34