J3_5O60_018
3D structure
- PDB id
- 5O60 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 5O60|1|A|U|31, 5O60|1|A|U|536, 5O60|1|A|U|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5O60_018 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2382
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5O60|1|A|C|29
5O60|1|A|U|30
5O60|1|A|U|31
5O60|1|A|G|32
*
5O60|1|A|C|533
5O60|1|A|G|534
5O60|1|A|A|535
5O60|1|A|U|536
5O60|1|A|A|537
5O60|1|A|G|538
5O60|1|A|C|539
5O60|1|A|G|540
5O60|1|A|G|541
5O60|1|A|A|542
5O60|1|A|U|543
5O60|1|A|U|544
5O60|1|A|A|545
5O60|1|A|G|546
5O60|1|A|U|547
5O60|1|A|A|548
5O60|1|A|C|549
*
5O60|1|A|G|556
5O60|1|A|G|557
5O60|1|A|A|558
5O60|1|A|A|559
5O60|1|A|U|560
5O60|1|A|G|561
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
Coloring options: