J3_5O61_011

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

5O61|1|A|A|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_011 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1096

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5O61|1|A|C|1413
5O61|1|A|G|1414
5O61|1|A|A|1415
5O61|1|A|A|1416
5O61|1|A|A|1417
5O61|1|A|G|1418
*
5O61|1|A|C|1843
5O61|1|A|A|1844
5O61|1|A|G|1845
*
5O61|1|A|U|1857
5O61|1|A|A|1858
5O61|1|A|A|1859
5O61|1|A|G|1860

Current chains

Chain A

23S rRNA

Nearby chains