J3_5O61_012

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5O61|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_012 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1213

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5O61|1|A|C|1421
5O61|1|A|A|1422
5O61|1|A|A|1423
5O61|1|A|G|1424
*
5O61|1|A|C|1823
5O61|1|A|C|1824
5O61|1|A|C|1825
5O61|1|A|A|1826
5O61|1|A|A|1827
5O61|1|A|A|1828
5O61|1|A|C|1829
*
5O61|1|A|G|1838
5O61|1|A|U|1839
5O61|1|A|G|1840

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34