J3_5O61_023

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GCUUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5O61|1|BA|U|52, 5O61|1|BA|A|55

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_023 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0904

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5O61|1|BA|G|50
5O61|1|BA|C|51
5O61|1|BA|U|52
5O61|1|BA|U|53
5O61|1|BA|A|54
5O61|1|BA|A|55
5O61|1|BA|C|56
*
5O61|1|BA|G|359
5O61|1|BA|G|360
5O61|1|BA|G|361
5O61|1|BA|G|362
5O61|1|BA|A|363
5O61|1|BA|A|364
5O61|1|BA|U|365
5O61|1|BA|A|366
5O61|1|BA|U|367
*
5O61|1|BA|A|393
5O61|1|BA|G|394
5O61|1|BA|C|395

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BP

30S ribosomal protein S16