J3_5O61_027

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

5O61|1|BA|U|853, 5O61|1|BA|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_027 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1143

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5O61|1|BA|C|806
5O61|1|BA|U|807
5O61|1|BA|A|808
5O61|1|BA|G|809
*
5O61|1|BA|C|839
5O61|1|BA|G|840
5O61|1|BA|U|841
5O61|1|BA|A|842
5O61|1|BA|G|843
*
5O61|1|BA|C|850
5O61|1|BA|A|851
5O61|1|BA|U|852
5O61|1|BA|U|853
5O61|1|BA|A|854
5O61|1|BA|A|855
5O61|1|BA|G|856

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BH

30S ribosomal protein S8

Chain BV

30S ribosomal protein S2