J3_5O61_029

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGGA*UAC*GGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_029 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0898

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5O61|1|BA|C|925
5O61|1|BA|G|926
5O61|1|BA|G|927
5O61|1|BA|A|928
*
5O61|1|BA|U|1216
5O61|1|BA|A|1217
5O61|1|BA|C|1218
*
5O61|1|BA|G|1319
5O61|1|BA|G|1320
5O61|1|BA|A|1321
5O61|1|BA|G|1322

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BI

30S ribosomal protein S9

Chain BM

30S ribosomal protein S13

Chain BW

Transfer RNA; tRNA