J3_5O61_032

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UUUGACAU*GCAG*CUUAUG

Length

18 nucleotides

Bulged bases

5O61|1|BA|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O61_032 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1883

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5O61|1|BA|U|972
5O61|1|BA|U|973
5O61|1|BA|U|974
5O61|1|BA|G|975
5O61|1|BA|A|976
5O61|1|BA|C|977
5O61|1|BA|A|978
5O61|1|BA|U|979
*
5O61|1|BA|G|1024
5O61|1|BA|C|1025
5O61|1|BA|A|1026
5O61|1|BA|G|1027
*
5O61|1|BA|C|1191
5O61|1|BA|U|1192
5O61|1|BA|U|1193
5O61|1|BA|A|1194
5O61|1|BA|U|1195
5O61|1|BA|G|1196

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BN

30S ribosomal protein S14 type Z