J3_5OT7_028
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 5OT7|1|4|U|504, 5OT7|1|4|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OT7_028 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2531
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5OT7|1|4|G|30
5OT7|1|4|C|31
*
5OT7|1|4|G|474
5OT7|1|4|U|475
5OT7|1|4|G|476
5OT7|1|4|A|477
5OT7|1|4|A|478
5OT7|1|4|A|479
5OT7|1|4|A|480
5OT7|1|4|G|481
5OT7|1|4|A|482
5OT7|1|4|A|483
5OT7|1|4|C|484
*
5OT7|1|4|G|496
5OT7|1|4|A|497
5OT7|1|4|G|498
5OT7|1|4|U|499
5OT7|1|4|G|500
5OT7|1|4|A|501
5OT7|1|4|A|502
5OT7|1|4|A|503
5OT7|1|4|U|504
5OT7|1|4|A|505
5OT7|1|4|G|506
5OT7|1|4|A|507
5OT7|1|4|G|508
5OT7|1|4|C|509
5OT7|1|4|C|510
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain v
- 50S ribosomal protein L20
- Chain x
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L23
- Chain z
- 50S ribosomal protein L24
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