J3_5OT7_029
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5OT7|1|4|C|34, 5OT7|1|4|U|448, 5OT7|1|4|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OT7_029 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1418
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5OT7|1|4|C|32
5OT7|1|4|U|33
5OT7|1|4|C|34
5OT7|1|4|G|35
*
5OT7|1|4|C|445
5OT7|1|4|G|446
5OT7|1|4|A|447
5OT7|1|4|U|448
5OT7|1|4|A|449
5OT7|1|4|G|450
5OT7|1|4|C|451
5OT7|1|4|G|452
5OT7|1|4|C|453
5OT7|1|4|A|454
5OT7|1|4|C|455
5OT7|1|4|C|456
5OT7|1|4|A|457
5OT7|1|4|G|458
5OT7|1|4|U|459
5OT7|1|4|A|460
5OT7|1|4|C|461
*
5OT7|1|4|G|468
5OT7|1|4|G|469
5OT7|1|4|A|470
5OT7|1|4|A|471
5OT7|1|4|A|472
5OT7|1|4|G|473
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L34
- Chain i
- 50S ribosomal protein L4
- Chain v
- 50S ribosomal protein L20
- Chain y
- 50S ribosomal protein L23
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