J3_5T2A_003

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCG*CAG*CUUGAAU

Length

14 nucleotides

Bulged bases

5T2A|1|2|U|886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T2A_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.3273

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5T2A|1|2|A|861
5T2A|1|2|G|862
5T2A|1|2|C|863
5T2A|1|2|G|864
*
5T2A|1|2|C|874
5T2A|1|2|A|875
5T2A|1|2|G|876
*
5T2A|1|2|C|885
5T2A|1|2|U|886
5T2A|1|2|U|887
5T2A|1|2|G|888
5T2A|1|2|A|889
5T2A|1|2|A|890
5T2A|1|2|U|891

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 6

uS4

Chain AT

eS24