J3_5T2A_015
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAG*UCAUCAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 5T2A|1|B|U|22, 5T2A|1|B|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_015 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.1399
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5T2A|1|A|G|1595
5T2A|1|A|A|1596
5T2A|1|A|A|1597
5T2A|1|A|G|1598
*
5T2A|1|B|U|19
5T2A|1|B|C|20
5T2A|1|B|A|21
5T2A|1|B|U|22
5T2A|1|B|C|23
5T2A|1|B|A|24
5T2A|1|B|C|25
*
5T2A|1|B|G|34
5T2A|1|B|U|35
5T2A|1|B|C|36
Current chains
- Chain A
- LSU-alpha
- Chain B
- LSU-beta
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain h
- eL34
- Chain l
- eL37
- Chain o
- eL39
Coloring options: