J3_5T2A_018
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAAC*GUU*ACUGACA
- Length
- 14 nucleotides
- Bulged bases
- 5T2A|1|B|A|1261, 5T2A|1|B|A|1262
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_018 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0957
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|B|U|1260
5T2A|1|B|A|1261
5T2A|1|B|A|1262
5T2A|1|B|C|1263
*
5T2A|1|B|G|1288
5T2A|1|B|U|1289
5T2A|1|B|U|1290
*
5T2A|1|B|A|1304
5T2A|1|B|C|1305
5T2A|1|B|U|1306
5T2A|1|B|G|1307
5T2A|1|B|A|1308
5T2A|1|B|C|1309
5T2A|1|B|A|1310
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- uL13
- Chain U
- uL14
- Chain d
- uL3
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