J3_5T2A_022

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACUUAG*CGCGCAAAU*AGC

Length

20 nucleotides

Bulged bases

5T2A|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T2A_022 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.1125

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

5T2A|1|2|G|41
5T2A|1|2|G|42
5T2A|1|2|A|43
5T2A|1|2|C|44
5T2A|1|2|U|45
5T2A|1|2|U|46
5T2A|1|2|A|47
5T2A|1|2|G|48
*
5T2A|1|2|C|474
5T2A|1|2|G|475
5T2A|1|2|C|476
5T2A|1|2|G|477
5T2A|1|2|C|478
5T2A|1|2|A|479
5T2A|1|2|A|480
5T2A|1|2|A|481
5T2A|1|2|U|482
*
5T2A|1|2|A|512
5T2A|1|2|G|513
5T2A|1|2|C|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 6

uS4

Chain AS

uS12