J3_5TCU_004

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

5TCU|1|A|U|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1818

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5TCU|1|A|C|834
5TCU|1|A|U|835
5TCU|1|A|A|836
5TCU|1|A|A|837
*
5TCU|1|A|U|867
5TCU|1|A|G|868
5TCU|1|A|C|869
5TCU|1|A|A|870
5TCU|1|A|G|871
*
5TCU|1|A|C|878
5TCU|1|A|A|879
5TCU|1|A|U|880
5TCU|1|A|U|881
5TCU|1|A|A|882
5TCU|1|A|A|883
5TCU|1|A|G|884

Current chains

Chain A

16S RRNA

Nearby chains

Chain SF

30S ribosomal protein S8