J3_5TCU_008
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TCU_008 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.1907
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5TCU|1|A|C|1075
5TCU|1|A|G|1076
5TCU|1|A|U|1077
5TCU|1|A|C|1078
5TCU|1|A|A|1079
5TCU|1|A|G|1080
*
5TCU|1|A|C|1119
5TCU|1|A|G|1120
5TCU|1|A|C|1121
5TCU|1|A|A|1122
5TCU|1|A|A|1123
5TCU|1|A|C|1124
5TCU|1|A|C|1125
*
5TCU|1|A|G|1198
5TCU|1|A|A|1199
5TCU|1|A|U|1200
5TCU|1|A|G|1201
5TCU|1|A|A|1202
5TCU|1|A|C|1203
5TCU|1|A|G|1204
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain S1
- 30S ribosomal protein S10
- Chain S5
- 30S ribosomal protein S14 type Z
- Chain SB
- 30S ribosomal protein S3
- Chain SD
- 30S ribosomal protein S5
- Chain SH
- 30S ribosomal protein S9
Coloring options: