J3_5TCU_031
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5TCU|1|B|U|34, 5TCU|1|B|U|494, 5TCU|1|B|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TCU_031 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.1315
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5TCU|1|B|C|32
5TCU|1|B|U|33
5TCU|1|B|U|34
5TCU|1|B|G|35
*
5TCU|1|B|C|491
5TCU|1|B|G|492
5TCU|1|B|A|493
5TCU|1|B|U|494
5TCU|1|B|A|495
5TCU|1|B|G|496
5TCU|1|B|U|497
5TCU|1|B|G|498
5TCU|1|B|A|499
5TCU|1|B|A|500
5TCU|1|B|C|501
5TCU|1|B|C|502
5TCU|1|B|A|503
5TCU|1|B|G|504
5TCU|1|B|U|505
5TCU|1|B|A|506
5TCU|1|B|C|507
*
5TCU|1|B|G|514
5TCU|1|B|G|515
5TCU|1|B|A|516
5TCU|1|B|A|517
5TCU|1|B|A|518
5TCU|1|B|G|519
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain L3
- 50S ribosomal protein L20
- Chain L6
- 50S ribosomal protein L23
- Chain LG
- 50S ribosomal protein L34
- Chain LJ
- 50S ribosomal protein L4
Coloring options: