J3_5TCU_040

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUC*GUUG*CAUUAAAG

Length

16 nucleotides

Bulged bases

5TCU|1|B|A|2545, 5TCU|1|B|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_040 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.2574

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5TCU|1|B|C|2544
5TCU|1|B|A|2545
5TCU|1|B|U|2546
5TCU|1|B|C|2547
*
5TCU|1|B|G|2572
5TCU|1|B|U|2573
5TCU|1|B|U|2574
5TCU|1|B|G|2575
*
5TCU|1|B|C|2587
5TCU|1|B|A|2588
5TCU|1|B|U|2589
5TCU|1|B|U|2590
5TCU|1|B|A|2591
5TCU|1|B|A|2592
5TCU|1|B|A|2593
5TCU|1|B|G|2594

Current chains

Chain B

23S RRNA

Nearby chains

Chain LN

50S ribosomal protein L14