J3_5TZS_002
3D structure
- PDB id
- 5TZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Architecture of the yeast small subunit processome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TZS_002 not in the Motif Atlas
- Homologous match to J3_8P9A_076
- Geometric discrepancy: 0.3257
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
5TZS|1|1|C|1161
5TZS|1|1|C|1162
5TZS|1|1|A|1163
5TZS|1|1|G|1164
*
5TZS|1|1|C|1581
5TZS|1|1|U|1582
5TZS|1|1|A|1583
5TZS|1|1|G|1584
5TZS|1|1|U|1585
5TZS|1|1|A|1586
5TZS|1|1|A|1587
*
5TZS|1|1|U|1609
5TZS|1|1|G|1610
5TZS|1|1|A|1611
5TZS|1|1|U|1612
5TZS|1|1|U|1613
5TZS|1|1|A|1614
5TZS|1|1|C|1615
5TZS|1|1|G|1616
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain 6
- rpS5_US7
- Chain C
- rpS16_uS9
- Chain G
- rpS28_eS28
- Chain O
- Utp1
- Chain m
- Imp4
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