J3_5U4I_007

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5U4I|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5U4I_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1285

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5U4I|1|A|C|1306
5U4I|1|A|A|1307
5U4I|1|A|A|1308
5U4I|1|A|G|1309
*
5U4I|1|A|C|1605
5U4I|1|A|C|1606
5U4I|1|A|C|1607
5U4I|1|A|A|1608
5U4I|1|A|A|1609
5U4I|1|A|A|1610
5U4I|1|A|C|1611
*
5U4I|1|A|G|1620
5U4I|1|A|U|1621
5U4I|1|A|G|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L34