3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
5U4I|1|a|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5U4I_019 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.1457
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

5U4I|1|a|C|826
5U4I|1|a|U|827
5U4I|1|a|U|828
5U4I|1|a|G|829
*
5U4I|1|a|C|857
5U4I|1|a|G|858
5U4I|1|a|G|859
5U4I|1|a|A|860
5U4I|1|a|G|861
*
5U4I|1|a|C|868
5U4I|1|a|G|869
5U4I|1|a|U|870
5U4I|1|a|U|871
5U4I|1|a|A|872
5U4I|1|a|A|873
5U4I|1|a|G|874

Current chains

Chain a
16S rRNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain h
30S ribosomal protein S8
Chain u
30S ribosomal protein S21

Coloring options:


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