3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
5U4I|1|a|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5U4I_027 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.1409
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

5U4I|1|a|C|1237
5U4I|1|a|A|1238
5U4I|1|a|A|1239
5U4I|1|a|U|1240
5U4I|1|a|G|1241
*
5U4I|1|a|C|1296
5U4I|1|a|G|1297
5U4I|1|a|U|1298
5U4I|1|a|A|1299
5U4I|1|a|G|1300
5U4I|1|a|U|1301
5U4I|1|a|C|1302
5U4I|1|a|C|1303
*
5U4I|1|a|G|1334
5U4I|1|a|U|1335
5U4I|1|a|C|1336
5U4I|1|a|G|1337

Current chains

Chain a
16S rRNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain m
30S ribosomal protein S13
Chain y
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1577 s