3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5U4I_030 not in the Motif Atlas
Homologous match to J3_5J7L_069
Geometric discrepancy: 0.1261
The information below is about J3_5J7L_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5U4I|1|A|G|1424
5U4I|1|A|G|1425
5U4I|1|A|G|1426
5U4I|1|A|A|1427
5U4I|1|A|C|1428
5U4I|1|A|G|1429
*
5U4I|1|A|C|1564
5U4I|1|A|C|1565
*
5U4I|1|A|G|1568
5U4I|1|A|A|1569
5U4I|1|A|A|1570
5U4I|1|A|A|1571
5U4I|1|A|A|1572
5U4I|1|A|G|1573
5U4I|1|A|C|1574

Current chains

Chain A
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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