J3_5UQ8_020

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5UQ8|1|a|U|871, 5UQ8|1|a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UQ8_020 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0886

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5UQ8|1|a|C|826
5UQ8|1|a|U|827
5UQ8|1|a|A|828
5UQ8|1|a|G|829
*
5UQ8|1|a|C|857
5UQ8|1|a|G|858
5UQ8|1|a|A|859
5UQ8|1|a|A|860
5UQ8|1|a|G|861
*
5UQ8|1|a|C|868
5UQ8|1|a|G|869
5UQ8|1|a|U|870
5UQ8|1|a|U|871
5UQ8|1|a|A|872
5UQ8|1|a|A|873
5UQ8|1|a|G|874

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8