J3_5UQ8_029
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 5UQ8|1|a|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UQ8_029 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1417
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5UQ8|1|a|C|1237
5UQ8|1|a|A|1238
5UQ8|1|a|A|1239
5UQ8|1|a|U|1240
5UQ8|1|a|G|1241
*
5UQ8|1|a|C|1296
5UQ8|1|a|C|1297
5UQ8|1|a|C|1298
5UQ8|1|a|A|1299
5UQ8|1|a|G|1300
5UQ8|1|a|U|1301
5UQ8|1|a|U|1302
5UQ8|1|a|C|1303
*
5UQ8|1|a|G|1334
5UQ8|1|a|C|1335
5UQ8|1|a|C|1336
5UQ8|1|a|G|1337
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
- Chain u
- 30S ribosomal protein Thx
- Chain z
- Transfer RNA; tRNA
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