3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
5UQ8|1|a|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UQ8_029 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1417
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

5UQ8|1|a|C|1237
5UQ8|1|a|A|1238
5UQ8|1|a|A|1239
5UQ8|1|a|U|1240
5UQ8|1|a|G|1241
*
5UQ8|1|a|C|1296
5UQ8|1|a|C|1297
5UQ8|1|a|C|1298
5UQ8|1|a|A|1299
5UQ8|1|a|G|1300
5UQ8|1|a|U|1301
5UQ8|1|a|U|1302
5UQ8|1|a|C|1303
*
5UQ8|1|a|G|1334
5UQ8|1|a|C|1335
5UQ8|1|a|C|1336
5UQ8|1|a|G|1337

Current chains

Chain a
16S rRNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain m
30S ribosomal protein S13
Chain u
30S ribosomal protein Thx
Chain z
Transfer RNA; tRNA

Coloring options:


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