J3_5UQ8_030
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 5UQ8|1|A|U|504, 5UQ8|1|A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UQ8_030 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.08
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5UQ8|1|A|G|30
5UQ8|1|A|C|31
*
5UQ8|1|A|G|474
5UQ8|1|A|U|475
5UQ8|1|A|G|476
5UQ8|1|A|A|477
5UQ8|1|A|A|478
5UQ8|1|A|A|479
5UQ8|1|A|A|480
5UQ8|1|A|G|481
5UQ8|1|A|A|482
5UQ8|1|A|A|483
5UQ8|1|A|C|484
*
5UQ8|1|A|G|496
5UQ8|1|A|A|497
5UQ8|1|A|G|498
5UQ8|1|A|U|499
5UQ8|1|A|G|500
5UQ8|1|A|A|501
5UQ8|1|A|A|502
5UQ8|1|A|A|503
5UQ8|1|A|U|504
5UQ8|1|A|A|505
5UQ8|1|A|G|506
5UQ8|1|A|A|507
5UQ8|1|A|G|508
5UQ8|1|A|C|509
5UQ8|1|A|C|510
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain U
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L22
- Chain Y
- 50S ribosomal protein L24
Coloring options: