J3_5UYN_007

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5UYN|1|01|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYN_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1573

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5UYN|1|01|C|1306
5UYN|1|01|A|1307
5UYN|1|01|A|1308
5UYN|1|01|G|1309
*
5UYN|1|01|C|1605
5UYN|1|01|C|1606
5UYN|1|01|C|1607
5UYN|1|01|A|1608
5UYN|1|01|A|1609
5UYN|1|01|A|1610
5UYN|1|01|C|1611
*
5UYN|1|01|G|1620
5UYN|1|01|U|1621
5UYN|1|01|G|1622

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 32

50S ribosomal protein L34