J3_5UZ4_004

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5UZ4|1|A|U|871, 5UZ4|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UZ4_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1786

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5UZ4|1|A|C|826
5UZ4|1|A|U|827
5UZ4|1|A|U|828
5UZ4|1|A|G|829
*
5UZ4|1|A|C|857
5UZ4|1|A|G|858
5UZ4|1|A|G|859
5UZ4|1|A|A|860
5UZ4|1|A|G|861
*
5UZ4|1|A|C|868
5UZ4|1|A|G|869
5UZ4|1|A|U|870
5UZ4|1|A|U|871
5UZ4|1|A|A|872
5UZ4|1|A|A|873
5UZ4|1|A|G|874

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8