J3_5V7Q_010

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V7Q_010 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.165

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5V7Q|1|A|U|2328
5V7Q|1|A|U|2329
5V7Q|1|A|G|2330
*
5V7Q|1|A|C|2433
5V7Q|1|A|U|2434
5V7Q|1|A|A|2435
5V7Q|1|A|A|2436
5V7Q|1|A|C|2437
*
5V7Q|1|A|G|2461
5V7Q|1|A|G|2462
5V7Q|1|A|A|2463
5V7Q|1|A|C|2464
5V7Q|1|A|A|2465
5V7Q|1|A|G|2466

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28